Welcome to Neuroscout-CLI’s documentation!

The Neuroscout Command Line Interface (Neuroscout-CLI) allows you to easily execute analyses created on neuroscout.org. Neuroscout-CLI automatically fetches analysis dependencies (including data, and analysis specifications), fits a GLM model to the BIDS dataset, and produces shareable reports of the results.

Neuroscout-CLI uses FitLins to estimate linear models using the BIDS model specification.

Check out the Usage section for further information, including how to Installation the project.

Note

If you are new to the Neuroscout project, visit the Neuroscout website and the official Neuroscout Docs for a general introduction.

Contents

• Installation
  • Containerized Execution
    • Docker
    • Singularity
  • Google Colab
  • Manually prepared environment using pip
• Usage
  • Containerized execution
• Command-Line Arguments
  • neuroscout
    • get
    • run
    • upload
  • Optional FitLins arguments
• Outputs
  • sourcedata directory
  • fitlins directory
  • Uploading to NeuroVault